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GrainGenes Marker Report: k00726

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Locus	k00726
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 223.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak41k22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = TCATGTTAAAYTCACGGTTCA Parent 1 SNP sequence = TCATGTTAAACTCACGGTTCA Parent 2 SNP sequence = TCATGTTAAATTCACGGTTCA SNP = A/T SNP structure (UNICODE) = GTTCAGGAAAWAGCACAAAGT Parent 1 SNP sequence = GTTCAGGAAAAAGCACAAAGT Parent 2 SNP sequence = GTTCAGGAAATAGCACAAAGT SNP = T/G SNP structure (UNICODE) = ATACACCAATKTGAACCTACT Parent 1 SNP sequence = ATACACCAATTTGAACCTACT Parent 2 SNP sequence = ATACACCAATGTGAACCTACT
Probe for Locus	baak41k22
Locus	k00726
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 50S ribosomal protein L27, chloroplast precursor pir T02788 probable ribosomal protein L27 - rice
Type	PCR
PCR primers	Left 5' - TCAGCATCAACCAACGTGAT Right 5' - CTGCAACCCCTCAAAACATT
Sequence	BJ460648
PCR size	353