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GrainGenes Marker Report: k00750

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Locus	k00750
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 250.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak41l23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HapII SNP = T/A SNP structure (UNICODE) = ACCTAACTAAWTCACACCAGC Parent 1 SNP sequence = ACCTAACTAATTCACACCAGC Parent 2 SNP sequence = ACCTAACTAAATCACACCAGC Recognized sequence for CAPs locus = CCGG SNP = G/A SNP structure (UNICODE) = GTAATCAACTRATTCCTTTGG Parent 1 SNP sequence = GTAATCAACTGATTCCTTTGG Parent 2 SNP sequence = GTAATCAACTAATTCCTTTGG
Probe for Locus	baak41l23
Locus	k00750
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Ca2+/H+-exchanging protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACCTTGGTGTTCCATCAGC Right 5' - TGGTGAAATTCAAAGGAGGG
Sequence	BJ546471
PCR size	478