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GrainGenes Marker Report: k00778

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Locus	k00778
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 21.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak46o05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/T SNP structure (UNICODE) = GCCGCAACGAWTCACAGTCCG Parent 1 SNP sequence = GCCGCAACGAATCACAGTCCG Parent 2 SNP sequence = GCCGCAACGATTCACAGTCCG SNP = G/T SNP structure (UNICODE) = CATCCAATACKTATATATGTT Parent 1 SNP sequence = CATCCAATACGTATATATGTT Parent 2 SNP sequence = CATCCAATACTTATATATGTT SNP = A/C SNP structure (UNICODE) = GAATGCTGCTMCAAGCATGTG Parent 1 SNP sequence = GAATGCTGCTACAAGCATGTG Parent 2 SNP sequence = GAATGCTGCTCCAAGCATGTG SNP = A/G SNP structure (UNICODE) = TTTCACATGARTGGTCATACC Parent 1 SNP sequence = TTTCACATGAATGGTCATACC Parent 2 SNP sequence = TTTCACATGAGTGGTCATACC
Probe for Locus	baak46o05
Locus	k00778
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ABC transporter [Oryza sativa (japonica cultivar-group)] dbj BAB40032.1 putative ABC transporter [Oryza sativa (japonica cultivar-
Type	PCR
PCR primers	Left 5' - ATTCGACAACTGTTCGTCACAC Right 5' - AGGGCTTTCCAAACACTCCT
Sequence	BJ461825
PCR size	398