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GrainGenes Marker Report: k00783

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Locus	k00783
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 88.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak44g22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = T/C SNP structure (UNICODE) = TTGTCAACTAYGCGAGGATAT Parent 1 SNP sequence = TTGTCAACTATGCGAGGATAT Parent 2 SNP sequence = TTGTCAACTACGCGAGGATAT Recognized sequence for CAPs locus = CGCG
Probe for Locus	baak44g22
Locus	k00783
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAO00842.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ACATTGAGAGCATGTGCAGC Right 5' - AAGATGCATGTTAGGGTCGG
Sequence	BJ461316
PCR size	433