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GrainGenes Marker Report: k00797

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Locus	k00797
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak45h14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/C SNP structure (UNICODE) = GGGGACAAGTSGGGTGAGTTT Parent 1 SNP sequence = GGGGACAAGTGGGGTGAGTTT Parent 2 SNP sequence = GGGGACAAGTCGGGTGAGTTT SNP structure (UNICODE) = GGACCCCTGGSTGGGGCTTTG Parent 1 SNP sequence = GGACCCCTGGGTGGGGCTTTG Parent 2 SNP sequence = GGACCCCTGGCTGGGGCTTTG SNP = C/G SNP structure (UNICODE) = GCTTTGGGGGSTCCCCTTTCC Parent 1 SNP sequence = GCTTTGGGGGCTCCCCTTTCC Parent 2 SNP sequence = GCTTTGGGGGGTCCCCTTTCC SNP = C/A SNP structure (UNICODE) = TTTTTTTTGTMCAAAGGATTT Parent 1 SNP sequence = TTTTTTTTGTCCAAAGGATTT Parent 2 SNP sequence = TTTTTTTTGTACAAAGGATTT
Probe for Locus	baak45h14
Locus	k00797
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = F12A21.16 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CATTTGACAGACGAGCCAGA Right 5' - GAGGACTTTGTGCTTGAGCC
Sequence	BJ546650
PCR size	409