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GrainGenes Marker Report: k00811

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Locus	k00811
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 216.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak46c17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/T SNP structure (UNICODE) = GAAGCCATGAKTTCATTCATT Parent 1 SNP sequence = GAAGCCATGAGTTCATTCATT Parent 2 SNP sequence = GAAGCCATGATTTCATTCATT SNP = C/T SNP structure (UNICODE) = AATACCTTGTYTACAGAGTAC Parent 1 SNP sequence = AATACCTTGTCTACAGAGTAC Parent 2 SNP sequence = AATACCTTGTTTACAGAGTAC
Probe for Locus	baak46c17
Locus	k00811
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAK09234.1 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTCCTTGACCCCAAACAGA Right 5' - TGGTTGGACAAGGACAATGA
Sequence	BJ461646
PCR size	401