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GrainGenes Marker Report: k00818

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Locus	k00818
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 134.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak44c12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Bsp1286I SNP = T/C SNP structure (UNICODE) = TATAAGAGCAYTTGGGTCACT Parent 1 SNP sequence = TATAAGAGCATTTGGGTCACT Parent 2 SNP sequence = TATAAGAGCACTTGGGTCACT Recognized sequence for CAPs locus = GDGCHC
Probe for Locus	baak44c12
Locus	k00818
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative VERNALIZATION INDEPENDENCE 4 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTTGGCGAAAAGACACACAC Right 5' - TAATCGAAACTCCACCAGCC
Sequence	BJ453696
PCR size	498