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GrainGenes Marker Report: k00839

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Locus	k00839
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 166.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak4j01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = PstI SNP = T/C SNP structure (UNICODE) = TGTTGGCTTGYTGCAGCATAG Parent 1 SNP sequence = TGTTGGCTTGTTGCAGCATAG Parent 2 SNP sequence = TGTTGGCTTGCTGCAGCATAG Recognized sequence for CAPs locus = CTGCAG
Probe for Locus	baak4j01
Locus	k00839
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] dbj BAB11241.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCATCTCGTTTTGTGTCCCA Right 5' - ACGCAAGTTAAGCATTTCGG
Sequence	AV912586
PCR size	363