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GrainGenes Marker Report: k00845

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Locus	k00845
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 204
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak45l08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 31 ] SNP = C/G SNP structure (UNICODE) = TTATTCACTASCAACTTTGTA Parent 1 SNP sequence = TTATTCACTACCAACTTTGTA Parent 2 SNP sequence = TTATTCACTAGCAACTTTGTA SNP = T/C SNP structure (UNICODE) = GGATGCCCGTYCCATGATCAA Parent 1 SNP sequence = GGATGCCCGTTCCATGATCAA Parent 2 SNP sequence = GGATGCCCGTCCCATGATCAA SNP = A/T SNP structure (UNICODE) = AGAATATCCAWGGACAAAGGT Parent 1 SNP sequence = AGAATATCCAAGGACAAAGGT Parent 2 SNP sequence = AGAATATCCATGGACAAAGGT SNP = G/A SNP structure (UNICODE) = TTGGCACAAGRGCAGCAGTAA Parent 1 SNP sequence = TTGGCACAAGGGCAGCAGTAA Parent 2 SNP sequence = TTGGCACAAGAGCAGCAGTAA SNP structure (UNICODE) = AGGGCATTCARTTTCGTTCCA Parent 1 SNP sequence = AGGGCATTCAGTTTCGTTCCA Parent 2 SNP sequence = AGGGCATTCAATTTCGTTCCA SNP = C/T SNP structure (UNICODE) = CTGCCAGCCCYCCGACGGTGA Parent 1 SNP sequence = CTGCCAGCCCCCCGACGGTGA Parent 2 SNP sequence = CTGCCAGCCCTCCGACGGTGA SNP = C/A SNP structure (UNICODE) = GCCAGCTCTCMACGCCGGACC Parent 1 SNP sequence = GCCAGCTCTCCACGCCGGACC Parent 2 SNP sequence = GCCAGCTCTCAACGCCGGACC SNP = T/A SNP structure (UNICODE) = CCTCCCACAAWTAAGCAGTGC Parent 1 SNP sequence = CCTCCCACAATTAAGCAGTGC Parent 2 SNP sequence = CCTCCCACAAATAAGCAGTGC
Probe for Locus	baak45l08
Locus	k00845
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir H84594 hypothetical protein At2g20920 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TGACAGCTTCTGTCCAGGTG Right 5' - CTGCAAGGCCTGTAACCTTC
Sequence	BJ461568
PCR size	433