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GrainGenes Marker Report: k00856

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Locus	k00856
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 127
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak45b03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/C SNP structure (UNICODE) = TGGCCGTGTASAAGGCGTCCA Parent 1 SNP sequence = TGGCCGTGTAGAAGGCGTCCA Parent 2 SNP sequence = TGGCCGTGTACAAGGCGTCCA SNP = T/C SNP structure (UNICODE) = TATACGCGCGYGCGTACGTAC Parent 1 SNP sequence = TATACGCGCGTGCGTACGTAC Parent 2 SNP sequence = TATACGCGCGCGCGTACGTAC SNP = G/T SNP structure (UNICODE) = AGGCGTCCACKGTGGTGTCGA Parent 1 SNP sequence = AGGCGTCCACGGTGGTGTCGA Parent 2 SNP sequence = AGGCGTCCACTGTGGTGTCGA
Probe for Locus	baak45b03
Locus	k00856
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = licheninase (EC 3.2.1.73) I precursor, splice form a - barley emb CAA40094.1 unnamed protein product [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CAACCCAGCTACAGGGTGAT Right 5' - CGTCATGTGCGTTCACCTAC
PCR size	419