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GrainGenes Marker Report: k00871

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Locus	k00871
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 136
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal13d17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/C SNP structure (UNICODE) = TCCACACGATYTCAGCAACTT Parent 1 SNP sequence = TCCACACGATTTCAGCAACTT Parent 2 SNP sequence = TCCACACGATCTCAGCAACTT SNP = G/C SNP structure (UNICODE) = TGAGCCCCTGSGCGAGCGTGC Parent 1 SNP sequence = TGAGCCCCTGGGCGAGCGTGC Parent 2 SNP sequence = TGAGCCCCTGCGCGAGCGTGC SNP = A/G SNP structure (UNICODE) = AGGCTTCAGARTGGCCGTTTG Parent 1 SNP sequence = AGGCTTCAGAATGGCCGTTTG Parent 2 SNP sequence = AGGCTTCAGAGTGGCCGTTTG SNP = C/A SNP structure (UNICODE) = GCTTATTTCCMCACGGGTTCT Parent 1 SNP sequence = GCTTATTTCCCCACGGGTTCT Parent 2 SNP sequence = GCTTATTTCCACACGGGTTCT
Probe for Locus	baal13d17
Locus	k00871
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Rieske Fe-S precursor protein [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - TAGGATAGGCCCTCCTCACC Right 5' - AGCACGTCACCAGCACTTC
Sequence	BJ477085
PCR size	407