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GrainGenes Marker Report: k00874

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Locus	k00874
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 221.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal15f24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 33 ] Restriction enzyme used for CAPS analysis = AseI SNP = G/T SNP structure (UNICODE) = ATAACTTTTAKCTGCTTTCAG Parent 1 SNP sequence = ATAACTTTTAGCTGCTTTCAG Parent 2 SNP sequence = ATAACTTTTATCTGCTTTCAG Recognized sequence for CAPs locus = ATTAAT SNP = C/G SNP structure (UNICODE) = TCTCATATCTSTAGTCTCGAG Parent 1 SNP sequence = TCTCATATCTCTAGTCTCGAG Parent 2 SNP sequence = TCTCATATCTGTAGTCTCGAG SNP = A/G SNP structure (UNICODE) = AACACCTGAARCCACTTTTCT Parent 1 SNP sequence = AACACCTGAAACCACTTTTCT Parent 2 SNP sequence = AACACCTGAAGCCACTTTTCT SNP = G/A SNP structure (UNICODE) = AGGTGCTGATRGTGTTTTTTG Parent 1 SNP sequence = AGGTGCTGATGGTGTTTTTTG Parent 2 SNP sequence = AGGTGCTGATAGTGTTTTTTG SNP = T/A SNP structure (UNICODE) = CTCTTTTGCTWGAGCAATTAG Parent 1 SNP sequence = CTCTTTTGCTTGAGCAATTAG Parent 2 SNP sequence = CTCTTTTGCTAGAGCAATTAG SNP = A/T SNP structure (UNICODE) = TCTAACAACAWATAGATACGT Parent 1 SNP sequence = TCTAACAACAAATAGATACGT Parent 2 SNP sequence = TCTAACAACATATAGATACGT SNP = G/C SNP structure (UNICODE) = GATGAATTTASATAAATGACA Parent 1 SNP sequence = GATGAATTTAGATAAATGACA Parent 2 SNP sequence = GATGAATTTACATAAATGACA SNP structure (UNICODE) = GCAATTAGCTSTGCTTGCATC Parent 1 SNP sequence = GCAATTAGCTCTGCTTGCATC Parent 2 SNP sequence = GCAATTAGCTGTGCTTGCATC
Probe for Locus	baal15f24
Locus	k00874
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0497A05.16 [Oryza sativa (japonica cultivar-group)] dbj BAB92605.1 P0456E05.4 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATTTCAAGCATCGGTTTTGG Right 5' - TCTTTGCTGGTGTGCCTATG
Sequence	BJ473575
PCR size	351