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GrainGenes Marker Report: k00877

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Locus	k00877
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 242.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal0e07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MvaI SNP = C/A SNP structure (UNICODE) = AGTTTCTTGGMCTGGCAGGGA Parent 1 SNP sequence = AGTTTCTTGGCCTGGCAGGGA Parent 2 SNP sequence = AGTTTCTTGGACTGGCAGGGA Recognized sequence for CAPs locus = CCWGG
Probe for Locus	baal0e07
Locus	k00877
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - TTCAGAGACGGGAATCCTTG Right 5' - TCAGGAAGAAGGAGAAGGCA
Sequence	AV928467
PCR size	352