Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00888

[Submit comment/correction]

Locus	k00888
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal16h16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = TTTCTTTCTGRCGCAAGCAAA Parent 1 SNP sequence = TTTCTTTCTGACGCAAGCAAA Parent 2 SNP sequence = TTTCTTTCTGGCGCAAGCAAA Recognized sequence for CAPs locus = GCGC
Probe for Locus	baal16h16
Locus	k00888
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0009G03.26 [Oryza sativa (japonica cultivar-group)] dbj BAB03626.1 P0009G03.26 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAACGGACGAAGATAGGGAA Right 5' - GACAGAGAGATTCGATCGCC
Sequence	BJ473709
PCR size	477