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GrainGenes Marker Report: k00892

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Locus	k00892
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal12b04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AseI SNP = G/A SNP structure (UNICODE) = AATATTCATARTTAATACACA Parent 1 SNP sequence = AATATTCATAGTTAATACACA Parent 2 SNP sequence = AATATTCATAATTAATACACA Recognized sequence for CAPs locus = ATTAAT
Probe for Locus	baal12b04
Locus	k00892
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0504D03.20 [Oryza sativa (japonica cultivar-group)] sp Q9AWM9 BXD1_ORYSA Brix domain containing protein 1 homolog
Type	PCR
PCR primers	Left 5' - TTTTCGAGTAGCGTCCGAGT Right 5' - GACGCACATCCACTAGCTCA
Sequence	BJ473362
PCR size	387