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GrainGenes Marker Report: k00893

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Locus	k00893
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 156.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal12j15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = TACTAACTTCYTACATGGCAA Parent 1 SNP sequence = TACTAACTTCTTACATGGCAA Parent 2 SNP sequence = TACTAACTTCCTACATGGCAA SNP = C/T SNP structure (UNICODE) = ATGGCAATCTYCAAGCAGTGT Parent 1 SNP sequence = ATGGCAATCTCCAAGCAGTGT Parent 2 SNP sequence = ATGGCAATCTTCAAGCAGTGT SNP = G/A SNP structure (UNICODE) = AAAGGGGGCGRCGGGTTGACA Parent 1 SNP sequence = AAAGGGGGCGGCGGGTTGACA Parent 2 SNP sequence = AAAGGGGGCGACGGGTTGACA
Probe for Locus	baal12j15
Locus	k00893
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = flavin-containing monooxygenase (FMO) family [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCACGAGAGTTTCCAAGGAC Right 5' - TGCTTGAGCAGTTACTCCGA
Sequence	BJ547961
PCR size	352