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GrainGenes Marker Report: k00894

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Locus	k00894
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 89.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal12p08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = N/G SNP structure (UNICODE) = AGTCTCAGAAN/GGATGGGATGA Parent 1 SNP sequence = AGTCTCAGAANGATGGGATGA Parent 2 SNP sequence = AGTCTCAGAAGGATGGGATGA SNP = C/N SNP structure (UNICODE) = AGTGAGCTTTC/NATGTATCAGG Parent 1 SNP sequence = AGTGAGCTTTCATGTATCAGG Parent 2 SNP sequence = AGTGAGCTTTNATGTATCAGG
Probe for Locus	baal12p08
Locus	k00894
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ATPase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGTTGCATCCCTAAGCATT Right 5' - GACATGGTCGACATCCACG
Sequence	BJ547978
PCR size	385