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GrainGenes Marker Report: k00901

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Locus	k00901
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 156.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal0f04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = GGGCAGCAGCRATGCCACCTT Parent 1 SNP sequence = GGGCAGCAGCAATGCCACCTT Parent 2 SNP sequence = GGGCAGCAGCGATGCCACCTT SNP = C/A SNP structure (UNICODE) = ATGTACAGCAMAAACGTGAAT Parent 1 SNP sequence = ATGTACAGCACAAACGTGAAT Parent 2 SNP sequence = ATGTACAGCAAAAACGTGAAT SNP structure (UNICODE) = TGGAAAAATCRCAACATCGCA Parent 1 SNP sequence = TGGAAAAATCACAACATCGCA Parent 2 SNP sequence = TGGAAAAATCGCAACATCGCA SNP = C/T SNP structure (UNICODE) = CACCTTCTTTYGTAGCAACTG Parent 1 SNP sequence = CACCTTCTTTCGTAGCAACTG Parent 2 SNP sequence = CACCTTCTTTTGTAGCAACTG
Probe for Locus	baal0f04
Locus	k00901
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir T51424 hypothetical protein T9L3_90 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - AGAAGACTAATGGCGCGAAA Right 5' - CAGAGACAGCATCCAGCTCA
Sequence	AV934599
PCR size	398