Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00919

[Submit comment/correction]

Locus	k00919
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 303.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal13f18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = GCCGGAAGGTRCTCTTGAATC Parent 1 SNP sequence = GCCGGAAGGTGCTCTTGAATC Parent 2 SNP sequence = GCCGGAAGGTACTCTTGAATC SNP structure (UNICODE) = CAACAAGCTCRGCAGCTTCGA Parent 1 SNP sequence = CAACAAGCTCGGCAGCTTCGA Parent 2 SNP sequence = CAACAAGCTCAGCAGCTTCGA SNP = C/A SNP structure (UNICODE) = ATGTGAGGCAMAGGTACATGT Parent 1 SNP sequence = ATGTGAGGCACAGGTACATGT Parent 2 SNP sequence = ATGTGAGGCAAAGGTACATGT
Probe for Locus	baal13f18
Locus	k00919
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0032F06.18 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGCTGCAAAGCAGTACAACA Right 5' - GTCTCGTCATCTTCACGCAA
Sequence	BJ474351
PCR size	365