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GrainGenes Marker Report: k00936

Locus	k00936
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 45.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal16l05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/C SNP structure (UNICODE) = GAAGGGATTGSAGAGTATGTC Parent 1 SNP sequence = GAAGGGATTGGAGAGTATGTC Parent 2 SNP sequence = GAAGGGATTGCAGAGTATGTC Recognized sequence for CAPs locus = GCGC SNP = T/G SNP structure (UNICODE) = CTATCACTCTKATCAGTGAAG Parent 1 SNP sequence = CTATCACTCTTATCAGTGAAG Parent 2 SNP sequence = CTATCACTCTGATCAGTGAAG
Probe for Locus	baal16l05
Locus	k00936
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - GGCAAAGAGAAAGCAGCAAA Right 5' - CGGAGAAAGCCAAATCTGAG
Sequence	BJ473731
PCR size	407