Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k00944

[Submit comment/correction]

Locus	k00944
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 277.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal13m24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/G SNP structure (UNICODE) = ACAACACAAGSAAATGAAGGG Parent 1 SNP sequence = ACAACACAAGCAAATGAAGGG Parent 2 SNP sequence = ACAACACAAGGAAATGAAGGG SNP = G/A SNP structure (UNICODE) = GATCAGGATCRTCACTTTTCC Parent 1 SNP sequence = GATCAGGATCGTCACTTTTCC Parent 2 SNP sequence = GATCAGGATCATCACTTTTCC SNP = T/A SNP structure (UNICODE) = ATACGCTCTTWATATGCTACA Parent 1 SNP sequence = ATACGCTCTTTATATGCTACA Parent 2 SNP sequence = ATACGCTCTTAATATGCTACA SNP = T/C SNP structure (UNICODE) = ATGAAGGGGGYAAAACAGGTT Parent 1 SNP sequence = ATGAAGGGGGTAAAACAGGTT Parent 2 SNP sequence = ATGAAGGGGGCAAAACAGGTT
Probe for Locus	baal13m24
Locus	k00944
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = AFG1-like ATPase family protein [Arabidopsis thaliana] gb AAM20461.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GAAGTTCACTCCATTGGGCT Right 5' - ACCAACGATGGCATTGAGTT
Sequence	BJ474442
PCR size	464