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GrainGenes Marker Report: k00946

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Locus	k00946
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 179.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal15j23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = T/A SNP structure (UNICODE) = AAGTCATCAGWTGCTTACCAG Parent 1 SNP sequence = AAGTCATCAGTTGCTTACCAG Parent 2 SNP sequence = AAGTCATCAGATGCTTACCAG SNP = G/T SNP structure (UNICODE) = CATAACATTTKATTTGAACAA Parent 1 SNP sequence = CATAACATTTGATTTGAACAA Parent 2 SNP sequence = CATAACATTTTATTTGAACAA SNP = T/C SNP structure (UNICODE) = TGTGTGTGTGYGCGCGCTTGG Parent 1 SNP sequence = TGTGTGTGTGTGCGCGCTTGG Parent 2 SNP sequence = TGTGTGTGTGCGCGCGCTTGG SNP = T/G SNP structure (UNICODE) = CGTATTGGATKTGGTCAGAGT Parent 1 SNP sequence = CGTATTGGATTTGGTCAGAGT Parent 2 SNP sequence = CGTATTGGATGTGGTCAGAGT SNP = A/G SNP structure (UNICODE) = TAACATGAGARAGGATATATT Parent 1 SNP sequence = TAACATGAGAAAGGATATATT Parent 2 SNP sequence = TAACATGAGAGAGGATATATT
Probe for Locus	baal15j23
Locus	k00946
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = wound-responsive protein, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATGAACATTCACGACCAGCA Right 5' - CAAAAGGATATCTTGCCCCA
Sequence	BJ548002
PCR size	472