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GrainGenes Marker Report: k00948

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Locus	k00948
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 45.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal16l11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = A/C SNP structure (UNICODE) = CATTTTGTAGMTTCTTCTATA Parent 1 SNP sequence = CATTTTGTAGATTCTTCTATA Parent 2 SNP sequence = CATTTTGTAGCTTCTTCTATA Recognized sequence for CAPs locus = GANTC
Probe for Locus	baal16l11
Locus	k00948
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative dehydratase/deaminase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAACATGGGATACCGACACA Right 5' - CAGAAGCTTAACGAGGACGG
Sequence	AV832931
PCR size	425