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GrainGenes Marker Report: k00953

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Locus	k00953
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 40.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal12m14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = A/G SNP structure (UNICODE) = TTCGTCCACTRCCTCGATGAA Parent 1 SNP sequence = TTCGTCCACTACCTCGATGAA Parent 2 SNP sequence = TTCGTCCACTGCCTCGATGAA Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	baal12m14
Locus	k00953
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative receptor protein kinase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAACAAAGCTGGGGAATGTG Right 5' - GGCCATTGACTTTGCTGACT
Sequence	BJ473484
PCR size	363