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GrainGenes Marker Report: k00961

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Locus	k00961
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 23.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal16l16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = G/A SNP structure (UNICODE) = ACTGACTCGCRATTTATTTTA Parent 1 SNP sequence = ACTGACTCGCGATTTATTTTA Parent 2 SNP sequence = ACTGACTCGCAATTTATTTTA Recognized sequence for CAPs locus = CGCG
Probe for Locus	baal16l16
Locus	k00961
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = dihydrolipoamide S-acetyltransferase [Zea mays]
Type	PCR
PCR primers	Left 5' - GAGCTCATATCAAGCCCTCG Right 5' - TAGCGCGTGGAGTTACTGTG
Sequence	BJ473739
PCR size	422