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GrainGenes Marker Report: k00970

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Locus	k00970
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 103.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal19k05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = G/C SNP structure (UNICODE) = TGAATCAACTSCAAATCTGAG Parent 1 SNP sequence = TGAATCAACTGCAAATCTGAG Parent 2 SNP sequence = TGAATCAACTCCAAATCTGAG SNP = A/G SNP structure (UNICODE) = TGTTGCAGGCRAAGTAAACCT Parent 1 SNP sequence = TGTTGCAGGCAAAGTAAACCT Parent 2 SNP sequence = TGTTGCAGGCGAAGTAAACCT SNP = C/T SNP structure (UNICODE) = CATGGTGCCAYAAACAAGTAT Parent 1 SNP sequence = CATGGTGCCACAAACAAGTAT Parent 2 SNP sequence = CATGGTGCCATAAACAAGTAT SNP = T/A SNP structure (UNICODE) = TTACACGAAGWATAGCTTCAT Parent 1 SNP sequence = TTACACGAAGTATAGCTTCAT Parent 2 SNP sequence = TTACACGAAGAATAGCTTCAT SNP = A/T SNP structure (UNICODE) = TGAAGCAAGTWTGAGATTGTC Parent 1 SNP sequence = TGAAGCAAGTATGAGATTGTC Parent 2 SNP sequence = TGAAGCAAGTTTGAGATTGTC
Probe for Locus	baal19k05
Locus	k00970
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = RAD23 protein homolog - rice gb AAB65841.1 osRAD23 [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CTGTGTGTAAGGTGGTGCGT Right 5' - AGCAGCCTCGAATCATCATC
Sequence	BJ548092
PCR size	431