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GrainGenes Marker Report: k00991

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Locus	k00991
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 63.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal19a12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/C SNP structure (UNICODE) = GGTCGCCTACSGGTGAGCATT Parent 1 SNP sequence = GGTCGCCTACGGGTGAGCATT Parent 2 SNP sequence = GGTCGCCTACCGGTGAGCATT Recognized sequence for CAPs locus = CCGG
Probe for Locus	baal19a12
Locus	k00991
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0071D01.1 [Oryza sativa (japonica cultivar-group)] emb CAE03917.2 OSJNBb0015G09.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGCAAGATTGCCAAAAGTA Right 5' - CAAGAACCTGGTCGTGCTC
Sequence	BJ474099
PCR size	362