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GrainGenes Marker Report: k00998

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Locus	k00998
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 190.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal17e18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = A/G SNP structure (UNICODE) = GCTAAGATCCRGAGAAAAGGA Parent 1 SNP sequence = GCTAAGATCCAGAGAAAAGGA Parent 2 SNP sequence = GCTAAGATCCGGAGAAAAGGA Recognized sequence for CAPs locus = CCGG
Probe for Locus	baal17e18
Locus	k00998
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative aminotransferase [Oryza sativa] emb CAE04333.2 OSJNBa0008M17.4 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACATAAAACAAGCTGGGCG Right 5' - AGGCTTGCAACATCCAGAAG
Sequence	BJ473841
PCR size	375