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GrainGenes Marker Report: k01005

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Locus	k01005
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 80.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal19i12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = C/T SNP structure (UNICODE) = GGCTTACAGTYGACAGTAATC Parent 1 SNP sequence = GGCTTACAGTCGACAGTAATC Parent 2 SNP sequence = GGCTTACAGTTGACAGTAATC SNP = T/C SNP structure (UNICODE) = GAATCTGGGTYGGATGATGGC Parent 1 SNP sequence = GAATCTGGGTTGGATGATGGC Parent 2 SNP sequence = GAATCTGGGTCGGATGATGGC SNP structure (UNICODE) = ATGGCACACCYTTGTTCAATG Parent 1 SNP sequence = ATGGCACACCTTTGTTCAATG Parent 2 SNP sequence = ATGGCACACCCTTGTTCAATG SNP structure (UNICODE) = GAAACATCTAYTAGGCTTACA Parent 1 SNP sequence = GAAACATCTATTAGGCTTACA Parent 2 SNP sequence = GAAACATCTACTAGGCTTACA
Probe for Locus	baal19i12
Locus	k01005
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0076A22.1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAACCCAAATTCCGTTTGGT Right 5' - TCAGACGGGGAATTTTTGAG
Sequence	BJ474201
PCR size	448