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GrainGenes Marker Report: k01007

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Locus	k01007
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 233
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal1b16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = C/A SNP structure (UNICODE) = ATGCAGTGCTMAATTCCAAGC Parent 1 SNP sequence = ATGCAGTGCTCAATTCCAAGC Parent 2 SNP sequence = ATGCAGTGCTAAATTCCAAGC SNP = A/C SNP structure (UNICODE) = AGATGCAGGTMAACTTCATGC Parent 1 SNP sequence = AGATGCAGGTAAACTTCATGC Parent 2 SNP sequence = AGATGCAGGTCAACTTCATGC SNP = G/A SNP structure (UNICODE) = AGTACAAGACRGAAAACGGAA Parent 1 SNP sequence = AGTACAAGACGGAAAACGGAA Parent 2 SNP sequence = AGTACAAGACAGAAAACGGAA SNP = A/G SNP structure (UNICODE) = TTTCATCTATRTTACCTTCCA Parent 1 SNP sequence = TTTCATCTATATTACCTTCCA Parent 2 SNP sequence = TTTCATCTATGTTACCTTCCA SNP = A/T SNP structure (UNICODE) = AGCTTCGAGCWAAGAACACAT Parent 1 SNP sequence = AGCTTCGAGCAAAGAACACAT Parent 2 SNP sequence = AGCTTCGAGCTAAGAACACAT
Probe for Locus	baal1b16
Locus	k01007
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0423A12.19 [Oryza sativa (japonica cultivar-group)] dbj BAB93248.1 P0423A12.19 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACTCCTCCCATGTCGCTTTA Right 5' - AGTTTCGAAGCATCACCCAG
Sequence	AV934643
PCR size	361