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GrainGenes Marker Report: k01014

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Locus	k01014
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 32.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal18m18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = CTGCAAAGACRAAACAGTCTC Parent 1 SNP sequence = CTGCAAAGACGAAACAGTCTC Parent 2 SNP sequence = CTGCAAAGACAAAACAGTCTC SNP = T/G SNP structure (UNICODE) = TATCAAAATTKTCTTTTGAGA Parent 1 SNP sequence = TATCAAAATTTTCTTTTGAGA Parent 2 SNP sequence = TATCAAAATTGTCTTTTGAGA SNP structure (UNICODE) = CGATCATCAGRCTGTCAAGAA Parent 1 SNP sequence = CGATCATCAGGCTGTCAAGAA Parent 2 SNP sequence = CGATCATCAGACTGTCAAGAA
Probe for Locus	baal18m18
Locus	k01014
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative CLC-d chloride channel protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCATCGCCCGTTTAGATAGA Right 5' - CTGTTCCGGTGCTATGGTTT
Sequence	BJ474075
PCR size	380