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GrainGenes Marker Report: k01031

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Locus	k01031
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 134.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal1d17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/A SNP structure (UNICODE) = CAAACATCCGRAAATGCACAG Parent 1 SNP sequence = CAAACATCCGGAAATGCACAG Parent 2 SNP sequence = CAAACATCCGAAAATGCACAG Recognized sequence for CAPs locus = CCGG
Probe for Locus	baal1d17
Locus	k01031
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ1092_A07.23 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCTACAGAAATGGGGCTTCA Right 5' - CCGTTCTTGATCTCCTTGGT
Sequence	AV934679
PCR size	351