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GrainGenes Marker Report: k01042

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Locus	k01042
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 101.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal19m17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = -/C SNP structure (UNICODE) = WTCTCTCATC-/CTATCTCGA-A Parent 1 SNP sequence = ATCTCTCATC-TATCTCGA-A Parent 2 SNP sequence = TTCTCTCATCCTATCTCGATA Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	baal19m17
Locus	k01042
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Aspartic proteinase precursor pir JS0732 aspartic proteinase (EC 3.4.23.-) - rice
Type	PCR
PCR primers	Left 5' - ATCATCGGCGTTCTGGTTAC Right 5' - CTGTGGGAAAGCCTACATCC
Sequence	AV930235
PCR size	380