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GrainGenes Marker Report: k01043

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Locus	k01043
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 204.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal1e06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = ATCATCACCTYGTAGCAGGAT Parent 1 SNP sequence = ATCATCACCTCGTAGCAGGAT Parent 2 SNP sequence = ATCATCACCTTGTAGCAGGAT SNP = C/N SNP structure (UNICODE) = GAGCACAGGCC/NAGANAATTAC Parent 1 SNP sequence = GAGCACAGGCCAGANAATTAC Parent 2 SNP sequence = GAGCACAGGCNAGANAATTAC
Probe for Locus	baal1e06
Locus	k01043
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = callose synthase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGACGGCCTAACAAAACAAT Right 5' - CGTCCACAATCAAGACCCTT
Sequence	AV934689
PCR size	396