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GrainGenes Marker Report: k01091

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Locus	k01091
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 105.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal29m02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = ATACTCGACGRGAAGAAGGGA Parent 1 SNP sequence = ATACTCGACGAGAAGAAGGGA Parent 2 SNP sequence = ATACTCGACGGGAAGAAGGGA SNP = T/A SNP structure (UNICODE) = TATTGTTGCCWATACTCACGC Parent 1 SNP sequence = TATTGTTGCCTATACTCACGC Parent 2 SNP sequence = TATTGTTGCCAATACTCACGC SNP = C/T SNP structure (UNICODE) = GCGTAGCGCTYCACATATTGT Parent 1 SNP sequence = GCGTAGCGCTCCACATATTGT Parent 2 SNP sequence = GCGTAGCGCTTCACATATTGT
Probe for Locus	baal29m02
Locus	k01091
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains ESTs AU091627(C0596),D15410(C0596A)~similar to Arabidopsis thaliana chromosome 2, At2g41250~unknown protein [Oryza
Type	PCR
PCR primers	Left 5' - ACTGCCGCTCTTGACTCATT Right 5' - GCACATAGTCGATGTCCGTG
Sequence	AV938247
PCR size	398