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GrainGenes Marker Report: k01110

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Locus	k01110
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 155.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal25b05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/G SNP structure (UNICODE) = CCGCAGAACTSCGGACGTAGA Parent 1 SNP sequence = CCGCAGAACTCCGGACGTAGA Parent 2 SNP sequence = CCGCAGAACTGCGGACGTAGA Recognized sequence for CAPs locus = CCGG
Probe for Locus	baal25b05
Locus	k01110
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ACT domain repeat protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTACATGGCGGTGACACATT Right 5' - TGGCTGAGCTTATCAAAGCA
Sequence	BJ475349
PCR size	398