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GrainGenes Marker Report: k01114

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Locus	k01114
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 142.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal29i08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = PstI SNP = C/T SNP structure (UNICODE) = CCTGTTGCTGYAGCTATATCT Parent 1 SNP sequence = CCTGTTGCTGCAGCTATATCT Parent 2 SNP sequence = CCTGTTGCTGTAGCTATATCT Recognized sequence for CAPs locus = CTGCAG
Probe for Locus	baal29i08
Locus	k01114
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein T1N15.3 [imported] - Arabidopsis thaliana gb AAF79717.1 T1N15.3 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCAACACATGCCCACAATTT Right 5' - ACCTGTCGTCCTACACCACC
Sequence	BJ475688
PCR size	497