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GrainGenes Marker Report: k01126

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Locus	k01126
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 120.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal29j09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = A/G SNP structure (UNICODE) = AGCCCTATGTRAAAACATTTC Parent 1 SNP sequence = AGCCCTATGTAAAAACATTTC Parent 2 SNP sequence = AGCCCTATGTGAAAACATTTC SNP structure (UNICODE) = TAGGGCACCARACAAACTAGA Parent 1 SNP sequence = TAGGGCACCAAACAAACTAGA Parent 2 SNP sequence = TAGGGCACCAGACAAACTAGA SNP = T/A SNP structure (UNICODE) = TATGTACACAWTTTTGCACAG Parent 1 SNP sequence = TATGTACACATTTTTGCACAG Parent 2 SNP sequence = TATGTACACAATTTTGCACAG SNP = T/C SNP structure (UNICODE) = TCATTCAGAGYCGTATATGTA Parent 1 SNP sequence = TCATTCAGAGTCGTATATGTA Parent 2 SNP sequence = TCATTCAGAGCCGTATATGTA SNP structure (UNICODE) = AATGGTAATTRCTCCAGAAGA Parent 1 SNP sequence = AATGGTAATTACTCCAGAAGA Parent 2 SNP sequence = AATGGTAATTGCTCCAGAAGA
Probe for Locus	baal29j09
Locus	k01126
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = dnaJ-like protein [Oryza sativa (japonica cultivar-group)] dbj BAB89081.1 dnaJ-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTCATGGAGATTTGCCGTTT Right 5' - GGCAGTGTTTCTTCGGTTGT
Sequence	BJ475695
PCR size	410