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GrainGenes Marker Report: k01141

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Locus	k01141
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 96.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal20f05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/G SNP structure (UNICODE) = T/-ACCTCCTTCSGCTCCTTTCT Parent 1 SNP sequence = TACCTCCTTCCGCTCCTTTCT Parent 2 SNP sequence = -ACCTCCTTCGGCTCCTTTCT SNP = C/T SNP structure (UNICODE) = ACTGATGATCYTTGGG-/GAAAG Parent 1 SNP sequence = ACTGATGATCCTTGGG-AAAG Parent 2 SNP sequence = ACTGATGATCTTTGGGGAAAG
Probe for Locus	baal20f05
Locus	k01141
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ABC transporter family protein [Arabidopsis thaliana] pir T48248 ABC transporter-like protein - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - CCCACCCTTACCACTAGGCT Right 5' - GACCGTGGAGTAGAGAAGCG
Sequence	BJ474632
PCR size	398