Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k01176

[Submit comment/correction]

Locus	k01176
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 293.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal35f12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/T SNP structure (UNICODE) = AGCTTATTATKCTCATGTTCA Parent 1 SNP sequence = AGCTTATTATGCTCATGTTCA Parent 2 SNP sequence = AGCTTATTATTCTCATGTTCA SNP = N/A SNP structure (UNICODE) = AGTTGGATACN/AAGAGACAGTA Parent 1 SNP sequence = AGTTGGATACNAGAGACAGTA Parent 2 SNP sequence = AGTTGGATACAAGAGACAGTA SNP = G/A SNP structure (UNICODE) = GACCACCTCTRCATGATAGAG Parent 1 SNP sequence = GACCACCTCTGCATGATAGAG Parent 2 SNP sequence = GACCACCTCTACATGATAGAG
Probe for Locus	baal35f12
Locus	k01176
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = HMG1/2-like protein pir S18991 high mobility group protein - wheat
Type	PCR
PCR primers	Left 5' - GCGGTGCTTTGCTCTTTCTA Right 5' - CTGCAGCTGTTTGCCAAGT
Sequence	BJ548896
PCR size	442