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GrainGenes Marker Report: k01188

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Locus	k01188
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 80.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal35h05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = A/G SNP structure (UNICODE) = GGATCTTGTGRTATAGCACTT Parent 1 SNP sequence = GGATCTTGTGATATAGCACTT Parent 2 SNP sequence = GGATCTTGTGGTATAGCACTT SNP = T/G SNP structure (UNICODE) = AGCTTCCTCAKCCCAAGCGTC Parent 1 SNP sequence = AGCTTCCTCATCCCAAGCGTC Parent 2 SNP sequence = AGCTTCCTCAGCCCAAGCGTC SNP = C/G SNP structure (UNICODE) = AAGATAGATASTTGCAGCAAC Parent 1 SNP sequence = AAGATAGATACTTGCAGCAAC Parent 2 SNP sequence = AAGATAGATAGTTGCAGCAAC SNP = C/T SNP structure (UNICODE) = ACCAGCTAGAYCACCAGCTTC Parent 1 SNP sequence = ACCAGCTAGACCACCAGCTTC Parent 2 SNP sequence = ACCAGCTAGATCACCAGCTTC SNP = T/C SNP structure (UNICODE) = CTGATTCAATYGACTCCTAAC Parent 1 SNP sequence = CTGATTCAATTGACTCCTAAC Parent 2 SNP sequence = CTGATTCAATCGACTCCTAAC SNP structure (UNICODE) = ACGGGATTCARAGAGGGATCT Parent 1 SNP sequence = ACGGGATTCAAAGAGGGATCT Parent 2 SNP sequence = ACGGGATTCAGAGAGGGATCT
Probe for Locus	baal35h05
Locus	k01188
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0475H04.24 [Oryza sativa (japonica cultivar-group)] dbj BAB20656.1 P0475H04.24 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCGACCAAGAAGTAACAGCC Right 5' - CCAGTTAGTGACGAAGACATGG
Sequence	BJ476532
PCR size	490