Query (optional)   in Class  

GrainGenes Marker Report: k01199

[Submit comment/correction]

Locus
k01199
Type
SNP
Chromosome
1H
Map
Hv-HNxH602-1H278.3
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
baal34b14
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 16 ]
SNP = A/G
SNP structure (UNICODE) = ACTGAGAGTCRACCACTGTAT
Parent 1 SNP sequence = ACTGAGAGTCAACCACTGTAT
Parent 2 SNP sequence = ACTGAGAGTCGACCACTGTAT
SNP = C/G
SNP structure (UNICODE) = TGTCGATGCASAAGTTGCGAC
Parent 1 SNP sequence = TGTCGATGCACAAGTTGCGAC
Parent 2 SNP sequence = TGTCGATGCAGAAGTTGCGAC
SNP = C/T
SNP structure (UNICODE) = AATAGTCTGTYTCAGTCTCAC
Parent 1 SNP sequence = AATAGTCTGTCTCAGTCTCAC
Parent 2 SNP sequence = AATAGTCTGTTTCAGTCTCAC
SNP = T/A
SNP structure (UNICODE) = CAAACCAAGAWAGCATCAGTC
Parent 1 SNP sequence = CAAACCAAGATAGCATCAGTC
Parent 2 SNP sequence = CAAACCAAGAAAGCATCAGTC



Probe for Locus
baal34b14
Locus
k01199
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = syntaxin 71 (SYP71) [Arabidopsis thaliana] sp Q9SF29 SY71_ARATH Syntaxin 71 (AtSYP71)
Type
PCR
PCR primers
Left 5' - CGAACAAGTACTCGGAGCG
Right 5' - GATGATGTAGAACACCGCCC
Sequence
AV929935
PCR size
355