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GrainGenes Marker Report: k01220

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Locus	k01220
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 188.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal32m04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = G/A SNP structure (UNICODE) = TGTTACCGTARATGTTACCTC Parent 1 SNP sequence = TGTTACCGTAGATGTTACCTC Parent 2 SNP sequence = TGTTACCGTAAATGTTACCTC SNP = A/G SNP structure (UNICODE) = TTCACTTGGGRAAGACATCTC Parent 1 SNP sequence = TTCACTTGGGAAAGACATCTC Parent 2 SNP sequence = TTCACTTGGGGAAGACATCTC SNP = C/G SNP structure (UNICODE) = AGGAGTTGATSATCTGTCAGG Parent 1 SNP sequence = AGGAGTTGATCATCTGTCAGG Parent 2 SNP sequence = AGGAGTTGATGATCTGTCAGG SNP = G/C SNP structure (UNICODE) = CTGCGTGCCASATCCTGCTCT Parent 1 SNP sequence = CTGCGTGCCAGATCCTGCTCT Parent 2 SNP sequence = CTGCGTGCCACATCCTGCTCT SNP = A/C SNP structure (UNICODE) = CTGCTCTAGTMATAACAGGGT Parent 1 SNP sequence = CTGCTCTAGTAATAACAGGGT Parent 2 SNP sequence = CTGCTCTAGTCATAACAGGGT
Probe for Locus	baal32m04
Locus	k01220
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative ABC transporter [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CATAAAATTAGGCGGGGGAT Right 5' - GAGGCGTTTCTGCTCAACTC
Sequence	BQ664753
PCR size	366