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GrainGenes Marker Report: k01221

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Locus	k01221
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 109.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal32p23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = CTCCCTCTGTRAAACTTTCAG Parent 1 SNP sequence = CTCCCTCTGTAAAACTTTCAG Parent 2 SNP sequence = CTCCCTCTGTGAAACTTTCAG SNP = C/T SNP structure (UNICODE) = GACATAACCAYTATTAGTTGC Parent 1 SNP sequence = GACATAACCACTATTAGTTGC Parent 2 SNP sequence = GACATAACCATTATTAGTTGC SNP = C/A SNP structure (UNICODE) = CAGAGCTCCTMTGAAGTTTCG Parent 1 SNP sequence = CAGAGCTCCTCTGAAGTTTCG Parent 2 SNP sequence = CAGAGCTCCTATGAAGTTTCG
Probe for Locus	baal32p23
Locus	k01221
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative phosphoethanolamine methyltransferase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAGGAGGGAGGAACCCTTA Right 5' - TCAACTCTAATTGGGTGGGC
Sequence	BJ549950
PCR size	405