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GrainGenes Marker Report: k01229

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Locus	k01229
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 190.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal30l05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/A SNP structure (UNICODE) = AATACCTATCMACTTGTTGTA Parent 1 SNP sequence = AATACCTATCCACTTGTTGTA Parent 2 SNP sequence = AATACCTATCAACTTGTTGTA SNP = C/G SNP structure (UNICODE) = TGTATAATGASACAATGCATG Parent 1 SNP sequence = TGTATAATGACACAATGCATG Parent 2 SNP sequence = TGTATAATGAGACAATGCATG SNP = T/C SNP structure (UNICODE) = TAGACCCAAGYGAGCCAAAAG Parent 1 SNP sequence = TAGACCCAAGTGAGCCAAAAG Parent 2 SNP sequence = TAGACCCAAGCGAGCCAAAAG SNP = A/C SNP structure (UNICODE) = GATCGTATATMAAATAAAACA Parent 1 SNP sequence = GATCGTATATAAAATAAAACA Parent 2 SNP sequence = GATCGTATATCAAATAAAACA
Probe for Locus	baal30l05
Locus	k01229
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative delta l pyrroline-5-carboxylate synthetase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACAAGCATCCTCACTCTCG Right 5' - TGTTTCCATGACCACCACTG
Sequence	BJ475942
PCR size	390