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GrainGenes Marker Report: k01232

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Locus	k01232
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 42.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal32m10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/G SNP structure (UNICODE) = ATCAGTGGATSTTATCCCTGA Parent 1 SNP sequence = ATCAGTGGATCTTATCCCTGA Parent 2 SNP sequence = ATCAGTGGATGTTATCCCTGA SNP = T/G SNP structure (UNICODE) = CCTTGTTTAAKTATCTTTTAG Parent 1 SNP sequence = CCTTGTTTAATTATCTTTTAG Parent 2 SNP sequence = CCTTGTTTAAGTATCTTTTAG SNP = G/T SNP structure (UNICODE) = CTTTTAGGGAKTGACAATTTG Parent 1 SNP sequence = CTTTTAGGGAGTGACAATTTG Parent 2 SNP sequence = CTTTTAGGGATTGACAATTTG SNP = C/T SNP structure (UNICODE) = AAAAAATTAGYTCAGTATTGC Parent 1 SNP sequence = AAAAAATTAGCTCAGTATTGC Parent 2 SNP sequence = AAAAAATTAGTTCAGTATTGC
Probe for Locus	baal32m10
Locus	k01232
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = plastid-lipid associated protein PAP/fibrillin family [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGCGTATGGTTTGTTCAGGG Right 5' - TTCTTGCAGTTGCAGGTTTG
Sequence	BJ476207
PCR size	371