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GrainGenes Marker Report: k01239

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Locus	k01239
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 146.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal2n22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/T SNP structure (UNICODE) = CAGCCACAGTYCTTTGGATTA Parent 1 SNP sequence = CAGCCACAGTCCTTTGGATTA Parent 2 SNP sequence = CAGCCACAGTTCTTTGGATTA SNP = T/C SNP structure (UNICODE) = AAAGACTGAAYTATTGAGTTT Parent 1 SNP sequence = AAAGACTGAATTATTGAGTTT Parent 2 SNP sequence = AAAGACTGAACTATTGAGTTT SNP = A/T SNP structure (UNICODE) = AACTTAAACTWTTACAAAGAC Parent 1 SNP sequence = AACTTAAACTATTACAAAGAC Parent 2 SNP sequence = AACTTAAACTTTTACAAAGAC SNP = C/G SNP structure (UNICODE) = CTGTAGGCAASAAAACTGTAA Parent 1 SNP sequence = CTGTAGGCAACAAAACTGTAA Parent 2 SNP sequence = CTGTAGGCAAGAAAACTGTAA
Probe for Locus	baal2n22
Locus	k01239
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative SCARECROW gene regulator-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTCACCCATGTTAAACCACG Right 5' - TTTGACGACAAGTTCATCCG
Sequence	AV928839
PCR size	455