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GrainGenes Marker Report: k01245

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Locus	k01245
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 41.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal33a18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = G/A SNP structure (UNICODE) = CATCCTTTGARGTCCTGATAC Parent 1 SNP sequence = CATCCTTTGAGGTCCTGATAC Parent 2 SNP sequence = CATCCTTTGAAGTCCTGATAC SNP = T/C SNP structure (UNICODE) = TCTCAAGAGGYTCAACTAACG Parent 1 SNP sequence = TCTCAAGAGGTTCAACTAACG Parent 2 SNP sequence = TCTCAAGAGGCTCAACTAACG SNP structure (UNICODE) = AGAATCAATCRTCAACTAGTA Parent 1 SNP sequence = AGAATCAATCGTCAACTAGTA Parent 2 SNP sequence = AGAATCAATCATCAACTAGTA SNP = A/G SNP structure (UNICODE) = AGAAGTGGACRTTATCTTGCT Parent 1 SNP sequence = AGAAGTGGACATTATCTTGCT Parent 2 SNP sequence = AGAAGTGGACGTTATCTTGCT SNP = T/A SNP structure (UNICODE) = ACTTGACTCAWCTATGTCCTA Parent 1 SNP sequence = ACTTGACTCATCTATGTCCTA Parent 2 SNP sequence = ACTTGACTCAACTATGTCCTA
Probe for Locus	baal33a18
Locus	k01245
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = TIP120 protein, putative [Arabidopsis thaliana] gb AAM20708.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CTAAGCGCTTTTGCTTTGCT Right 5' - ACTTTGTGAGACGTGGAGGG
Sequence	BJ476250
PCR size	379