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GrainGenes Marker Report: k01249

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Locus	k01249
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 128.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal35p14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = A/T SNP structure (UNICODE) = AGACGACTTCWGCTCTTGATG Parent 1 SNP sequence = AGACGACTTCAGCTCTTGATG Parent 2 SNP sequence = AGACGACTTCTGCTCTTGATG Recognized sequence for CAPs locus = AGCT
Probe for Locus	baal35p14
Locus	k01249
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - CAAAACGAATTAGTCCCACGA Right 5' - CTGCTGAACTGTGCAATGGT
Sequence	BJ476612
PCR size	403