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GrainGenes Marker Report: k01272

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Locus	k01272
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 269.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal40n03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/T SNP structure (UNICODE) = TAGTAATTGTWATGTAGTAGG Parent 1 SNP sequence = TAGTAATTGTAATGTAGTAGG Parent 2 SNP sequence = TAGTAATTGTTATGTAGTAGG SNP = A/G SNP structure (UNICODE) = GGCCTCGGCCRCCATAGAACC Parent 1 SNP sequence = GGCCTCGGCCACCATAGAACC Parent 2 SNP sequence = GGCCTCGGCCGCCATAGAACC
Probe for Locus	baal40n03
Locus	k01272
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative nuclear RNA binding protein A [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCGGGTCCTGCTTACTTGTT Right 5' - CCTGGCATTTCTACAAGGGA
Sequence	BJ548981
PCR size	432